People

University of California-Riverside

Programs

Campus Champions

Skills

bash anaconda singularity modules gpfs slurm duo compiling conda jupyterhub mpi pip rstudio-server jekyll xml big-data data-management data-transfer file-formats aws cyverse training software-carpentry bioinformatics fastx gatk genomics smrt trinity gaussian gromacs amber charmm namd pytorch scikit-learn comsol atlas git github github-pages programming programming-best-practices cleanup version-control c pthreads c++fortran java python r sql xsede scheduling job-array pending-jobs pre-emption api batch-jobs checkpoint dmtcp docker kubernetes distributed-computing environment-modules parameter-sweeps cpu-bound scripting tmux screen terminal-emulation-and-window-management administering-hpc cluster-management cgroups prometheus cluster-support file-transfer globus x11 vpn ssh smb sftp samba rdp putty vnc federated-authentication cilogon hardware infiniband interconnect nvidia hpc-cluster-build gpu acls hpc-storage cifs nfs spectrum-scale networking dtn ethernet firewall sciencedmz tcp schedulers sge pbs encryption key-management software-installation easybuild spark unix-environment vim vm

Brian Haymore

University of Utah

HPC Team Manager

Programs

Campus Champions, CCMNet

Skills

file-systems bash batch-jobs scheduling terminal-emulation-and-window-management cgroups s3 ceph cluster-support file-transfer samba putty sftp smb ssh x11 hardware gpu hpc-cluster-build networking dtn firewall tcp schedulers slurm acls cifs lustre nfs hpc-operations backup permissions provisioning unix-environment sciencedmz storage community-outreach scripting environment-modules software-installation compiling os hpc-storage cloud-storage training file-system file-limit quota open-ondemand xdmod administering-hpc cluster cluster-management condo configuration-automation deployment ethernet hpc-arch-and-perf hpc-cluster-architecture infiniband interconnect nvidia screen tmux vim modules mentorship professional-development workforce-development c perl job-submission job-failure job-charging job-accounting core-hours pending-jobs pre-emption process-killed resources cmmc cui cybersecurity duo data-security secure-data-architecture lmod containers singularity centos

Chris Hemme

University of Rhode Island

Bioinformatics Core Director

Programs

CAREERS

Skills

big-data bioinformatics r data-analysis anaconda genomics biology

Lauren Hill-Beaton

Rutgers University

Recent Graduate

Programs

CAREERS

Skills

unix-environment conda pip ssh sftp open-ondemand netcdf anaconda python programming gis arcgis

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

James Hutcheson

Baylor University

Programs

Campus Champions, ACCESS CSSN

Skills

Kyle Hutson

Kansas Research and Education Network

Systems Engineer

Programs

Campus Champions

Skills

cui file-systems bash batch-jobs ceph putty sftp ssh tcp training

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Skills

sas data-wrangling data-management data-reproducibility biology bioinformatics genomics machine-learning psychology git github programming cleanup r

Chimdia Kabuo

Indiana University-Purdue University Fort Wayne

Programs

ACCESS CSSN

Skills

Madhukara Kekulandara

University of Rhode Island

Programs

CAREERS

Skills

masoud keramati

Northeastern University

Programs

ACCESS CSSN

Skills

Gaurav Khanna

University of Rhode Island

Professor/Director

Programs

Campus Champions, CAREERS, Northeast, CCMNet

Skills

Amy Koshoffer

University of Cincinnati

Programs

Campus Champions

Skills

data-management data-lifecycle workflow doi file-formats biology

yaniv kovalski

Stonehill College

Programs

Northeast

Skills

biology github modules r

Steven Kuhlo

UT Dallas

Programs

Skills

batch-jobs cluster-management cluster-support ssh x11 rdp samba sftp smb cpu-architecture hardware gpu hpc-cluster-architecture hpc-cluster-build gpfs nfs networking infiniband interconnect

Louis Li

Brown University

Programs

ACCESS CSSN

Skills

David Liu

Purdue University

Programs

CCMNet

Skills

ai deep-learning generative-ai machine-learning llm NAIRR-pilot neural-networks supervised-learning reinforcement-learning nlp unsupervised-learning linear-programming monte-carlo big-data aws azure cloud cloud-computing cloud-open-source cloud-storage account application-status change-organization delete-account documentation email-change email-duplication profile password login license errors proposal-request reporting tickets verification-code archiving backup data data-access-protocols data-lifecycle data-management data-management-software data-provenance data-reproducibility data-retention data-sharing data-transfer data-wrangling database doi file-formats file-system file-transfer github file-limit github-pages globus metadata quota s3 workflow weka storage sftp scratch checkpoint core-dump cpu-bound dmtcp memory profiling scaling benchmarking debugging IO-issue parallelization optimization performance-tuning tuning timing-issue xalt opencv natural-language-processing pytorch tensorflow api open-ondemand science-gateway administering-hpc cluster-management cgroups gpu DNS hpc-cluster-architecture sdn serverless-hpc provisioning nfs networking bash cleanup environment-modules screen git vim permissions modules os scripting vm x11 ssh tcp tcsh tmux ACCESS ACCESS-account ACCESS-allocations anvil FABRIC expanse open-science-grid jetstream abstract affiliations campus-champions management community-outreach citation mentorship professional-development project-management publication-database research-grants software-carpentry research-facilitation training workforce-development xsede anaconda c c++compiling conda html hadoop gcc gui fortran cuda java javascript julia jupyterhub openmp mpi openmpi programming programming-best-practices pthreads python sas Rust react scikit-learn spark spss sql xml batch-jobs core-hours gridengine job-charging job-array job-accounting job-failure job-sizing job-submission lsf pre-emption pending-jobs pbs process-killed resources slurm schedulers sge scheduling artificial-intelligence computer-science computational-chemistry data-science materials-science mathematics quantum-computing statistics cybersecurity duo encryption federated-authentication firewall key-management putty rdp spectrum-scale secure-data-architecture terminal-emulation-and-window-management vpn vnc containers dependencies docker kubernetes pip version-control software-installation

shuai liu

University of Arkansas

Programs

ACCESS CSSN

Skills

Angelo Lucia

University of Rhode Island

Programs

Skills

monte-carlo biology computational-chemistry fortran matlab

Lenore Martin

University of Rhoide Island

Tenured Associate Professor

Programs

CAREERS

Skills

Vinayak Mathur

Cabrini University

Assistant Professor

Programs

CAREERS

Skills

bioinformatics genomics biology

woman facing camera on a sunny day with bay in background

Alison McClellan

Stanford University

Programs

ACCESS CSSN

Skills

r python project-management research-facilitation research-grants biology computational-chemistry genomics

Aidan McCrillis

University of Rhode Island

Programs

CAREERS

Skills

bioinformatics data-science biology python